Let’s flip this around:
If you have religious freedom and can refuse to assist in an abortion or dispense “morning after pills”, can a Muslim doctor refuse to assist an Atheist, a Buddhist, a Christian, a Jew, a Hindu or a Shintoist if one was brought in to an emergency room? Can they just let them die? Can they actively assist in the death of an apostate, as their religion requires?

Can a cashier in a supermarket refuse to checkout bacon or shrimp because it is not kosher or halal?

Yes you have religious freedom. That does NOT mean you are free to impose that belief on others, or have the right to a job where your religion requires you to refuse some of the duties that job requires.

Instead, you should only take jobs that allow you to observe your religion and not whine if you are fired for refusing to do what you are hired to do.